Rosetta@Home version 3.31

Author	Message
Nightwish Send message Joined: 29 Mar 12 Posts: 10 Credit: 307,377 RAC: 0	Message 73377 - Posted: 6 Jul 2012, 5:46:21 UTC Four Client errors in a row. Here's one: <core_client_version>7.0.25</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2012- 7- 5 21:25: 9:] :: BOINC:: Initializing ... ok. [2012- 7- 5 21:25: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev48292.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/T0722_ab_t000___dekim_06_13.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 # cpu_run_time_pref: 28800 [2012- 7- 5 22:44: 1:] :: BOINC:: Initializing ... ok. [2012- 7- 5 22:44: 1:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev48292.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/T0722_ab_t000___dekim_06_13.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage4_kk_3 ... success! # cpu_run_time_pref: 28800 Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk6_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk7_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk8_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk9_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk10_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk11_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk12_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk13_fa ... success! Continuing computation from checkpoint: chk_S_00000001_FastRelax__chk14_fa ... success! Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 </stderr_txt> ]]> Validate state Invalid Claimed credit 17.1638733855513 Granted credit 0 application version 3.31 FYI, Nightwish ID: 73377 · Rating: 0 · rate: / Reply Quote

[AF>france>pas-de-calais]symaski62 Send message Joined: 19 Sep 05 Posts: 47 Credit: 33,871 RAC: 0	Message 73382 - Posted: 7 Jul 2012, 6:47:54 UTC problem ^^ https://boinc.bakerlab.org/rosetta/results.php?userid=506&offset=0 Tag::read - parse error, printing backtrace. Tag::read - parse error - file:istream line:3 column:1 - </TASKOPERATIONS> Tag::read - parse error - file:istream line:3 column:1 - ^ Tag::read - parse error - file:istream line:7 column:1 - </stage1> Tag::read - parse error - file:istream line:7 column:1 - ^ Tag::read - parse error - file:istream line:10 column:1 - </stage2> Tag::read - parse error - file:istream line:10 column:1 - ^ Tag::read - parse error - file:istream line:13 column:1 - </fullatom> Tag::read - parse error - file:istream line:13 column:1 - ^ Tag::read - parse error - file:istream line:14 column:1 - </SCOREFXNS> Tag::read - parse error - file:istream line:14 column:1 - ^ Tag::read - parse error - file:istream line:16 column:1 - </FILTERS> Tag::read - parse error - file:istream line:16 column:1 - ^ Tag::read - parse error - file:istream line:20 column:1 - <Template pdb="input_t000__0_C1/3qupA_303_aln.cl0.pdb" weight=0.215731022402638 /work/robetta/jobs/19939/32293/01_01_cm/t000_/hybrid/cluster0.filt.dist_csts /> Tag::read - parse error - file:istream line:20 column:1 - ^ Tag::read - parse error - file:istream line:18 column:1 - <Hybridize name=hybridize stage1_scorefxn=stage1 stage2_scorefxn=stage2 fa_scorefxn=fullatom batch=1 stage1_increase_cycles=1.0 stage2_increase_cycles=1.0 linmin_only=0> Tag::read - parse error - file:istream line:18 column:1 - ^ Tag::read - parse error - file:istream line:17 column:1 - <MOVERS> Tag::read - parse error - file:istream line:17 column:1 - ^ Tag::read - parse error - file:istream line:1 column:1 - <dock_design> Tag::read - parse error - file:istream line:1 column:1 - ^ ERROR: false ERROR:: Exit from: ......srcutilitytagTag.cc line: 387 BOINC:: Error reading and gzipping output datafile: default.out ID: 73382 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 73385 - Posted: 7 Jul 2012, 7:59:19 UTC To all of you that are using BOINC 7.0.25 it is know to cause problems on many projects. Why do you keep using it? / end of rant! ID: 73385 · Rating: 0 · rate: / Reply Quote

robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,281,662 RAC: 1,150	Message 73388 - Posted: 7 Jul 2012, 12:56:47 UTC - in response to Message 73385. To all of you that are using BOINC 7.0.25 it is know to cause problems on many projects. Why do you keep using it? / end of rant! Some of us are also running a very long workunit for another BOINC project - one that does not have checkpoints. I've downloaded 7.0.28 for this computer, but it will be around three weeks before a certain workunits reaches a point that allows me to install much of anything else. ID: 73388 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 73392 - Posted: 7 Jul 2012, 22:02:24 UTC Hi. Had a four errors lastnight all the same type, on my two rigs after about 4sec running. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471483403 rb_07_06_32295_62986__t000__2_D3_SAVE_ALL_OUT_IGNORE_THE_REST_52023_1952_0 Tag::read - parse error - file:istream line:20 column:1 - <Template pdb="input_t000__2_D3/3njkA_301_aln.cl2.pdb" weight=0.325456341525636 /work/robetta/jobs/19939/32295/01_01_cm/t000_/hybrid/cluster2.filt.dist_csts symmdef="input_t000__2_D3/3njkA_301_D3.symm"/> Tag::read - parse error - file:istream line:20 column:1 - ^ Tag::read - parse error - file:istream line:18 column:1 - <Hybridize name=hybridize stage1_scorefxn=stage1 stage2_scorefxn=stage2 fa_scorefxn=fullatom batch=1 stage1_increase_cycles=1.0 stage2_increase_cycles=1.0 linmin_only=0> Tag::read - parse error - file:istream line:18 column:1 - ^ Tag::read - parse error - file:istream line:17 column:1 - <MOVERS> Tag::read - parse error - file:istream line:17 column:1 - ^ Tag::read - parse error - file:istream line:1 column:1 - <dock_design> Tag::read - parse error - file:istream line:1 column:1 - ^ ERROR: false ERROR:: Exit from: src/utility/tag/Tag.cc line: 387 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> ==================================================================== https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471471165 rb_07_06_32294_62981__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_52018_625_1 ==================================================================== https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471477518 rb_07_06_32294_62981__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52018_1638_0 ==================================================================== https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471523340 rb_07_06_32297_62988__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_52030_2649_0 ------------------------------------------------------------------------ ID: 73392 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 73393 - Posted: 7 Jul 2012, 23:22:33 UTC Another five this morning with the same error as the others, from one of my rigs. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471519206 rb_07_06_32297_62988__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52030_1311_1 ======================================================= https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471519207 rb_07_06_32297_62988__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_52030_1570_1 ====================================================== https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471516749 rb_07_06_32297_62988__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52030_694_1 ===================================================== https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471525586 rb_07_06_32298_62989__t000__3_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52032_2275_1 ===================================================== https://boinc.bakerlab.org/rosetta/workunit.php?wuid=471525107 rb_07_06_32298_62989__t000__1_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52032_682_1 ----------------------------------------------------------- ID: 73393 · Rating: 0 · rate: / Reply Quote

rhb Send message Joined: 19 Jan 07 Posts: 5 Credit: 277,050 RAC: 0	Message 73394 - Posted: 8 Jul 2012, 0:31:49 UTC There are apparently still some bad workunits in the system. I just ran: Task ID 517983290 Name rb_07_06_32293_62980__t000__3_C1_SAVE_ALL_OUT_IGNORE_THE_REST_52024_1284_1 Workunit 471496494 which gave up after xml parsing errors: https://boinc.bakerlab.org/rosetta/result.php?resultid=517983290 BOINC:: Worker startup. Starting watchdog... Watchdog active. Tag::read - parse error, printing backtrace. Tag::read - parse error - file:istream line:3 column:1 - </TASKOPERATIONS> Tag::read - parse error - file:istream line:3 column:1 - ^ ... etc. Tag::read - parse error - file:istream line:1 column:1 - <dock_design> Tag::read - parse error - file:istream line:1 column:1 - ^ ERROR: false ERROR:: Exit from: src/utility/tag/Tag.cc line: 387 BOINC:: Error reading and gzipping output datafile: default.out ID: 73394 · Rating: 0 · rate: / Reply Quote

.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0	Message 73405 - Posted: 8 Jul 2012, 20:46:39 UTC I am geting the same errors with - rb_07_06 ID: 73405 · Rating: 0 · rate: / Reply Quote

robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,281,662 RAC: 1,150	Message 73415 - Posted: 10 Jul 2012, 1:47:15 UTC - in response to Message 73405. I am geting the same errors with - rb_07_06 The last two of you might want to mention which version of BOINC you saw these errors under, and which operating system, in case that's a factor in the problem. ID: 73415 · Rating: 0 · rate: / Reply Quote

Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 26,079,166 RAC: 16,668	Message 73420 - Posted: 10 Jul 2012, 18:59:21 UTC Last modified: 10 Jul 2012, 19:01:40 UTC My team members report many errors(after 5-20 sec from start) on rb_07_06... series too. (3 different computers + 3 "wingmans" computers from other teams, over 20/40 WUs/tasks) With these tasks series clearly something is wrong. And one new(i see such first time) strange glitch on one of comps: https://boinc.bakerlab.org/rosetta/results.php?hostid=1515881 ALL WUs marked as invalid. Although judging by the logs, most of them have been completed successfully. In what may be the problem? Errors in work of the validator? From what we has already tried to do: - 2 times reinstall BOINC client (version 7.0.25 was initially, then try a version 7.0.28, and at the end version 6.12.34) - And full reset of the project. Nothing has changed - same behavior and errors... ID: 73420 · Rating: 0 · rate: / Reply Quote

[AF>france>pas-de-calais]symaski62 Send message Joined: 19 Sep 05 Posts: 47 Credit: 33,871 RAC: 0	Message 73518 - Posted: 22 Jul 2012, 23:45:55 UTC https://boinc.bakerlab.org/rosetta/result.php?resultid=521080073 Tc680_fold_and_dock_d2_frank_intra_inter_cst_wt_4.0_52292_394_0 # cpu_run_time_pref: 86400 ====================================================== DONE :: 1 starting structures 55103.1 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 hier, je regarde image :) => ne pas 2 de plus (starting structures) erreur :) ID: 73518 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1995 Credit: 9,635,132 RAC: 6,870	Message 73560 - Posted: 1 Aug 2012, 14:58:14 UTC 523135364 523135354 ERROR: ERROR: FragmentIO: could not open file aa0000109_05.200_v1_3 ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 73560 · Rating: 0 · rate: / Reply Quote