Message boards : Number crunching : Minirosetta 1.82/1.88
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P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
This one failed, zero time. mini 1.87. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=243855048 Wed 29 Jul 2009 19:43:07 EST|rosetta@home|Output file looprebuild_t374_decoy_5_12863_2471_0_0 for task absent |
Luciano Bastianello Send message Joined: 9 Sep 06 Posts: 4 Credit: 269,064 RAC: 0 |
Windows Vista Ultimate 64 Kaspersky Internet Security minirosetta_1.88_windows_x86_64.exe is build without signature. On my sistem is jailed in "bad applications", execution forbidden. |
AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0 |
I'm getting a lot of 1.88 WUs with compute errors after zero time. They have the error message: "ERROR: Option matching -detect_disulf not found in command line top-level context" A few examples: https://boinc.bakerlab.org/rosetta/result.php?resultid=268993566 https://boinc.bakerlab.org/rosetta/result.php?resultid=268991528 https://boinc.bakerlab.org/rosetta/result.php?resultid=268991527 https://boinc.bakerlab.org/rosetta/result.php?resultid=268990691 https://boinc.bakerlab.org/rosetta/result.php?resultid=268990689 https://boinc.bakerlab.org/rosetta/result.php?resultid=268987949 https://boinc.bakerlab.org/rosetta/result.php?resultid=268987910 https://boinc.bakerlab.org/rosetta/result.php?resultid=268985221 https://boinc.bakerlab.org/rosetta/result.php?resultid=268984719 |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Another with zero time. mini 1.88. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245295471 Thu 30 Jul 2009 09:28:36 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1b3a_IGNORE_THE_REST_DECOY_14598_574_0_0 for task absent |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Another four failed on my quad all with zero time. What have you done? Is it a bad batch? mini 1.88. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245330803 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245256796 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245329397 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245267600 Thu 30 Jul 2009 12:48:16 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1a8o_IGNORE_THE_REST_DECOY_14598_435_1_0 for task absent Thu 30 Jul 2009 12:48:18 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1o4w_IGNORE_THE_REST_DECOY_14598_752_0_0 for task absent Thu 30 Jul 2009 12:48:19 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1ugh_IGNORE_THE_REST_DECOY_14598_381_1_0 for task absent Thu 30 Jul 2009 12:48:21 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1wdv_IGNORE_THE_REST_DECOY_14598_759_0_0 for task absent ================================================================================ Edit // I just found another on my 3ghz rig same error as others. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245327804 Thu 30 Jul 2009 12:34:51 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1t2i_IGNORE_THE_REST_DECOY_14598_1885_0_0 for task absent process exited with code 1 (0x1, -255) ERROR: Option matching -detect_disulf not found in command line top-level context |
ViVac Send message Joined: 10 Dec 08 Posts: 4 Credit: 117,352 RAC: 0 |
got two 0 sec error after 1.88 <core_client_version>6.6.36</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2009- 7-30 13:28:59:] :: BOINC:: Initializing ... ok. [2009- 7-30 13:28:59:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached ERROR: Option matching -detect_disulf not found in command line top-level context </stderr_txt> ]]> https://boinc.bakerlab.org/rosetta/result.php?resultid=269086838 https://boinc.bakerlab.org/rosetta/result.php?resultid=269089801 |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1997 Credit: 9,747,451 RAC: 10,562 |
got two 0 sec error after 1.88 Same here https://boinc.bakerlab.org/rosetta/result.php?resultid=269063471 https://boinc.bakerlab.org/rosetta/result.php?resultid=269061152 https://boinc.bakerlab.org/rosetta/result.php?resultid=268941898 https://boinc.bakerlab.org/rosetta/result.php?resultid=269012124 |
gerlik Send message Joined: 19 Nov 06 Posts: 10 Credit: 122,074 RAC: 0 |
most of 1.88 wu failed at start up, only 1 on my pc (linux) is working I have 1 1.87 wich try to upload but can't. There is very difficult to download new wu but also same difficult to upload when wu has successfully ended: can't link to server (lot of http error ) |
Rabenherz85 Send message Joined: 25 Jun 09 Posts: 3 Credit: 9,089 RAC: 0 |
30.07.2009 13:17:25 rosetta@home Started upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0 30.07.2009 13:20:08 Project communication failed: attempting access to reference site 30.07.2009 13:20:08 rosetta@home Temporarily failed upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0: HTTP error 30.07.2009 13:20:08 rosetta@home Backing off 11 min 28 sec on upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0 30.07.2009 13:20:10 Internet access OK - project servers may be temporarily down. Tried to upload ths WU for about an hour now without success |
Mack Send message Joined: 27 Apr 07 Posts: 3 Credit: 185,160 RAC: 0 |
Thu Jul 30 09:23:59 2009 rosetta@home Starting task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 using minirosetta version 188 Thu Jul 30 09:24:00 2009 rosetta@home Computation for task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 finished Thu Jul 30 09:24:00 2009 rosetta@home Output file lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1_0 for task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 absent Thu Jul 30 09:24:00 2009 rosetta@home Starting lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 Thu Jul 30 09:24:00 2009 rosetta@home Starting task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 using minirosetta version 188 Thu Jul 30 09:24:01 2009 rosetta@home Computation for task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 finished Thu Jul 30 09:24:01 2009 rosetta@home Output file lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1_0 for task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 absent Thu Jul 30 09:24:01 2009 rosetta@home Starting lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 Thu Jul 30 09:24:02 2009 rosetta@home Starting task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 using minirosetta version 188 Thu Jul 30 09:36:06 2009 rosetta@home Computation for task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 finished Thu Jul 30 09:36:06 2009 rosetta@home Output file lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1_0 for task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 absent Thu Jul 30 09:36:06 2009 rosetta@home Starting lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 Thu Jul 30 09:36:06 2009 rosetta@home Starting task lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 using minirosetta version 188 Thu Jul 30 09:36:08 2009 rosetta@home Computation for task lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 finished |
Luciano Bastianello Send message Joined: 9 Sep 06 Posts: 4 Credit: 269,064 RAC: 0 |
All my 3 computers Windows vista ultimate 64 Windows Server 2008 64 Linux Fedora 9 64 have a lot of errors: --- begin --- <core_client_version>6.6.36</core_client_version> <![CDATA[ <message> Funzione non corretta. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2009- 7-30 10:38:12:] :: BOINC:: Initializing ... ok. [2009- 7-30 10:38:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached ERROR: Option matching -detect_disulf not found in command line top-level context </stderr_txt> ]]> -- end --- |
googloo Send message Joined: 15 Sep 06 Posts: 133 Credit: 22,783,789 RAC: 5,547 |
What's the point of having a Rosetta Application Version Release Log if you Forum moderator Project administrator Project developer Project scientist don't post to it? |
BillK Send message Joined: 31 Oct 05 Posts: 3 Credit: 736,319 RAC: 0 |
Multiple errors, Can't download tasks PC that processes 1/hr has only gotten 1 in 24 hrs. Slower Mac none. |
Snags Send message Joined: 22 Feb 07 Posts: 198 Credit: 2,888,320 RAC: 0 |
lr8_B_seq_score12_ss5.0_rlbd_1prq_IGNORE_THE_REST_DECOY_14598_814_1 process exited with code 1 (0x1, -255) ERROR: Option matching -detect_disulf not found in command line top-level context |
Yifan Song Volunteer moderator Project developer Project scientist Send message Joined: 26 May 09 Posts: 62 Credit: 7,322 RAC: 0 |
Sorry about these errors. A lot of the errors (especially the disulfide ones) are due to the jobs submitted a while ago that need the new flags from the latest update. And after the reversion, those jobs are no longer valid. Our file server is a bit hammered right now, so it's hard to change those job status as well. We have found the bug that causes the slowing down of the code though, and we have tested the bug fix on our alpha server. Thus we are updating the program. Massive network traffic is still expected due to the version update. Hopefully everything will be stabilized in a few days. |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Here's another one that failed with zero time, hasn't been returned yet. mini 1.88. Fri 31 Jul 2009 07:34:09 EST|rosetta@home|Output file lr13_seq_score12_F_rlbd_1gu3_IGNORE_THE_REST_DECOY_14592_1803_1_0 for task absent |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
lr8_B_seq_score12_ss5.0_rlbd_1tig_IGNORE_THE_REST_DECOY_14598_1960_0 lr13_seq_score12_F_rlbd_1urn_IGNORE_THE_REST_DECOY_14592_1938_1 lr8_B_seq_score12_ss5.0_rlbd_2hsb_IGNORE_THE_REST_DECOY_14598_1939_1 lr13_seq_score12_F_rlbd_1a68_IGNORE_THE_REST_DECOY_14592_1904_0 lr8_B_seq_score12_ss5.0_rlbd_1fkb_IGNORE_THE_REST_DECOY_14598_1881_0 lr8_B_seq_score12_ss5.0_rlbd_1o73_IGNORE_THE_REST_DECOY_14598_598_0 lr8_B_seq_score12_ss5.0_rlbd_1ubi_IGNORE_THE_REST_DECOY_14598_1762_1 <core_client_version>6.4.7</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2009- 7-31 22:54:18:] :: BOINC:: Initializing ... ok. [2009- 7-31 22:54:18:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached ERROR: Option matching -detect_disulf not found in command line top-level context If these jobs are not valid, then where was the command from RAH to have the system delete them? How do you tell which ones were invalid and can be aborted and which ones will run ok? I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece. |
Path7 Send message Joined: 25 Aug 07 Posts: 128 Credit: 61,751 RAC: 0 |
Hello Greg, The error reports above are all about: lrX_XX_seq_score_...... Wu's. The lrX_XX_mmbend_rlbd_ ..... Wu's are not mentioned in the error reports above. Be aware: it is sometimes difficult to download new Wu's. Good luck, Path7. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Here are some more with the same error. That's 7 from the last time and 3 more for a total of 10 tasks that crashed with 0 time. I think these are part of that batch of disulf tasks that had a code problem. lr13_seq_score12_F_rlbd_1lis_IGNORE_THE_REST_DECOY_14592_2547_0 lr13_seq_score12_F_rlbd_1kpe_IGNORE_THE_REST_DECOY_14592_2547_0 lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2547_0 <core_client_version>6.4.7</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2009- 8- 1 5: 2:53:] :: BOINC:: Initializing ... ok. [2009- 8- 1 5: 2:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached ERROR: Option matching -detect_disulf not found in command line top-level context |
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Number crunching :
Minirosetta 1.82/1.88
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