Rosetta Mini with new score terms bug thread

Author	Message
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,324,975 RAC: 3,637	Message 56567 - Posted: 31 Oct 2008, 20:44:59 UTC Seems like there's a new version of minirosetta, not with a version number in the regular series: Rosetta Mini with new score terms Nobody else has created a bug thread for it, so I decided to start one. I've had three workunits of this type so far; all three reached a compute error in less than 1 second, both for me and for the other person running them. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185620050 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185900046 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185953422 ID: 56567 · Rating: 0 · rate: / Reply Quote

(_KoDAk_) Send message Joined: 18 Jul 06 Posts: 109 Credit: 1,859,263 RAC: 0	Message 56570 - Posted: 31 Oct 2008, 21:22:36 UTC 1st WU https://boinc.bakerlab.org/rosetta/result.php?resultid=203330759 is OK but long only 167 min ID: 56570 · Rating: 0 · rate: / Reply Quote

Odd Braathun Send message Joined: 2 Sep 08 Posts: 9 Credit: 16,125 RAC: 0	Message 56573 - Posted: 31 Oct 2008, 21:32:59 UTC Personally I have had 17 of these WU's that errored out just after a few secs. I reported the first 3 under the thread v.102. Then I gave up. I am not getting any new tasks. ID: 56573 · Rating: 0 · rate: / Reply Quote

Yin Gang Send message Joined: 17 Sep 05 Posts: 13 Credit: 63,992 RAC: 0	Message 56580 - Posted: 1 Nov 2008, 1:22:23 UTC Just finished one WU of this kind: https://boinc.bakerlab.org/rosetta/result.php?resultid=203821501 <stderr_txt> ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 74 called boinc_finish </stderr_txt> Welcome To Team China! ID: 56580 · Rating: 0 · rate: / Reply Quote

Aegis Maelstrom Send message Joined: 29 Oct 08 Posts: 61 Credit: 2,137,555 RAC: 0	Message 56590 - Posted: 1 Nov 2008, 7:30:33 UTC Last modified: 1 Nov 2008, 7:48:30 UTC I've already highlighted the problem in the Minirosetta v1.39 bug thread - like several other people. See my previous post for details. The problem seems to be with - at least - Win XP - and the latest software - both BOINC and Rosetta. EDIT: as I thought it looks like both Intel and AMD problem - see NetwtonianRefractor's AMD machine stats. This issue seems to be widespread, however some machines report they did the job. Thus, while writing "it just works" or "it just does not", could you provide further information about your OSes, machines etc.? =) I guess it would be easier to debug then (although the crash description suggests it should be trivial - there is no minirosetta_database zip file, just minirosetta_database_rev25321 one. I hope the maintainer fixes the software soon. Best regards for all! ID: 56590 · Rating: 0 · rate: / Reply Quote

robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,324,975 RAC: 3,637	Message 56593 - Posted: 1 Nov 2008, 10:04:32 UTC - in response to Message 56567. Last modified: 1 Nov 2008, 10:16:46 UTC I've had 9 workunits of Rosetta Mini with new score terms so far. All gave a compute error in less than 1 second of CPU time. For the ones already run by someone else, they got the same result. Could I have the option of not getting any more workunits of this type, until I see enough reports that the problem has been fixed? Also, these workunits do not put their version number on the Workunit details page, so it's hard to report the version number after the workunit has been reported and another workunit has been requested. Could it be added? I run these workunits under 32-bit Vista SP1, with an AMD CPU and BOINC 5.10.45. Some of the other BOINC projects I participate in aren't ready to switch to a later version of BOINC. ID: 56593 · Rating: 0 · rate: / Reply Quote

Rabinovitch Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0	Message 56597 - Posted: 1 Nov 2008, 12:56:26 UTC Computation error after more than 15 hours of WU processing. 11/01/08 14:53:04\|rosetta@home\|Restarting task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1454_1 using minirosetta_split_terms version 102 11/01/08 14:54:35\|rosetta@home\|Restarting task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1 using minirosetta_split_terms version 102 11/01/08 15:11:42\|rosetta@home\|Computation for task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1454_1 finished 11/01/08 15:11:42\|rosetta@home\|Output file 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1454_1_0 for task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1454_1 absent Many-many symbols are here: https://boinc.bakerlab.org/rosetta/result.php?resultid=203594723 ID: 56597 · Rating: 0 · rate: / Reply Quote

Purple Rabbit Send message Joined: 24 Sep 05 Posts: 28 Credit: 4,296,740 RAC: 3,006	Message 56601 - Posted: 1 Nov 2008, 16:06:12 UTC Last modified: 1 Nov 2008, 16:14:04 UTC I've had 100% failure for this app (25 of them so far). I've started aborting them as they appear. This is with BOINC 5.10.45 on both Linux and Windows (XP and Vista), but mainly Windows. I've got one task under Linux that's 4 hours into its 6 hour run. I'll wait to see how that goes. There's something wrong here (as if I'm telling you something new)! ID: 56601 · Rating: 0 · rate: / Reply Quote

robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,324,975 RAC: 3,637	Message 56603 - Posted: 1 Nov 2008, 16:57:24 UTC - in response to Message 56597. Computation error after more than 15 hours of WU processing. 11/01/08 14:53:04\|rosetta@home\|Restarting task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1454_1 using minirosetta_split_terms version 102 Yours are doing better than mine in some ways - so far, none of the Rosetta Mini with new score terms workunits has used even a whole CPU second on my machine before encountering an error. I got to look at results for some of the other users for the same workunits I got of this kind by following links under the Workunit Details windows. All of then had the same missing minirosetta_database zip file error message practically as their first error message. Some used XP and some used Vista. Some used an Intel CPU and some used an AMD CPU; all of these CPUs had more than one core. The users preferred an assortment of languages. There were an assortment of BOINC versions, from 5.8.* to 6.2.*. I'm not sure how much of what I didn't see was due to the way my machine was selected as eligible for the same workunits as other machines. ID: 56603 · Rating: 0 · rate: / Reply Quote

rochester new york Send message Joined: 2 Jul 06 Posts: 2842 Credit: 2,020,043 RAC: 0	Message 56604 - Posted: 1 Nov 2008, 17:16:46 UTC https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185965648 ID: 56604 · Rating: 0 · rate: / Reply Quote

(_KoDAk_) Send message Joined: 18 Jul 06 Posts: 109 Credit: 1,859,263 RAC: 0	Message 56608 - Posted: 1 Nov 2008, 21:20:25 UTC OK https://boinc.bakerlab.org/rosetta/workunit.php?wuid=186021731 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=186021706 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185977687 ID: 56608 · Rating: 0 · rate: / Reply Quote

rochester new york Send message Joined: 2 Jul 06 Posts: 2842 Credit: 2,020,043 RAC: 0	Message 56609 - Posted: 1 Nov 2008, 21:28:57 UTC - in response to Message 56604. Last modified: 1 Nov 2008, 21:29:30 UTC https://boinc.bakerlab.org/rosetta/workunit.php?wuid=186056121 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185965648 ID: 56609 · Rating: 0 · rate: / Reply Quote

Rabinovitch Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0	Message 56610 - Posted: 1 Nov 2008, 22:03:07 UTC Once again: 11/01/08 23:06:48\|rosetta@home\|Computation for task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1 finished 11/01/08 23:06:48\|rosetta@home\|Output file 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1_0 for task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1 absent Now after 19 hours of working! https://boinc.bakerlab.org/rosetta/result.php?resultid=203601208 ID: 56610 · Rating: 0 · rate: / Reply Quote

R.L. Casey Send message Joined: 7 Jun 06 Posts: 91 Credit: 2,728,885 RAC: 0	Message 56613 - Posted: 1 Nov 2008, 23:18:17 UTC - in response to Message 56610. Once again: 11/01/08 23:06:48\|rosetta@home\|Computation for task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1 finished 11/01/08 23:06:48\|rosetta@home\|Output file 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1_0 for task 1tul__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--1tul_-_4662_1467_1 absent Now after 19 hours of working! https://boinc.bakerlab.org/rosetta/result.php?resultid=203601208 Rabinovitch, Looking at the result you iedntified, I noticed that the BOINC version you are using is Version 6.3.19. According to the BOINC site, Version 6.3.19 is not a production version, and is to be used "only for testing." It would be a good idea to use a production version such as Version 6.2.19. Then, an error, if it appears, will be viewed as more legitimate. Thanks for crunching Rosetta! ID: 56613 · Rating: 0 · rate: / Reply Quote

Purple Rabbit Send message Joined: 24 Sep 05 Posts: 28 Credit: 4,296,740 RAC: 3,006	Message 56615 - Posted: 2 Nov 2008, 0:48:35 UTC Last modified: 2 Nov 2008, 1:42:07 UTC OK, I'm one for 26. The Linux one amazingly completed correctly on Tomato (host 282106). This looks like a Windows problem. My other Linux failures may be due to a memory defect...sigh. Onion (host 333136) has been having memory problems so I can't blame Rosetta. The Windows machines are dropping like flies on this app. ID: 56615 · Rating: 0 · rate: / Reply Quote

Path7 Send message Joined: 25 Aug 07 Posts: 128 Credit: 61,751 RAC: 0	Message 56617 - Posted: 2 Nov 2008, 1:48:02 UTC Hello all, Running Windows XP home SP3 & Windows Vista home SP1 both Boinc 5.10.45 together 7 times an error running the Mini w n s t 1.02 after less than a second runtime: stderr out <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Onjuiste functie. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: in::file::zip minirosetta_database.zip does not exist! ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 74 called boinc_finish </stderr_txt> ]]> I hope the techs will find a solution to those errors. Have a nice day, Path7. ID: 56617 · Rating: 0 · rate: / Reply Quote

googloo Send message Joined: 15 Sep 06 Posts: 133 Credit: 22,783,789 RAC: 5,547	Message 56618 - Posted: 2 Nov 2008, 2:46:31 UTC I have set Rosetta to "won't get new tasks" until this version is adjusted to work on XP. I am running BOINC 6.2.19. I haven't counted the number of tasks that failed within a minute, but it is more than twenty. ID: 56618 · Rating: 0 · rate: / Reply Quote

Rabinovitch Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0	Message 56619 - Posted: 2 Nov 2008, 4:26:07 UTC - in response to Message 56613. Rabinovitch, Looking at the result you iedntified, I noticed that the BOINC version you are using is Version 6.3.19. According to the BOINC site, Version 6.3.19 is not a production version, and is to be used "only for testing." It would be a good idea to use a production version such as Version 6.2.19. Then, an error, if it appears, will be viewed as more legitimate. Thanks for crunching Rosetta! Well, I suppose that most of us are not using a develompenst versions of BOINS Manager. But they meet a bugs anyway... By the way, I'm using it only for crunching PS3GRID WUs. ID: 56619 · Rating: 0 · rate: / Reply Quote

Rabinovitch Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0	Message 56624 - Posted: 2 Nov 2008, 10:23:24 UTC Once again: 02.11.2008 15:42:03\|rosetta@home\|Starting 2chf__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--2chf_-_4662_4628_1 02.11.2008 15:42:11\|rosetta@home\|Starting task 2chf__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--2chf_-_4662_4628_1 using minirosetta_split_terms version 102 02.11.2008 15:46:21\|rosetta@home\|Computation for task 2chf__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--2chf_-_4662_4628_1 finished 02.11.2008 15:46:21\|rosetta@home\|Output file 2chf__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--2chf_-_4662_4628_1_0 for task 2chf__BOINC_CASP8_ABRELAX_SPLIT_SPLIT_IGNORE_THE_REST-S25-9-S3-3--2chf_-_4662_4628_1 absent BOINC manager version: 02.11.2008 10:16:24\|\|Starting BOINC client version 6.3.19 for windows_x86_64 ID: 56624 · Rating: 0 · rate: / Reply Quote

(_KoDAk_) Send message Joined: 18 Jul 06 Posts: 109 Credit: 1,859,263 RAC: 0	Message 56630 - Posted: 2 Nov 2008, 13:45:14 UTC OK https://boinc.bakerlab.org/rosetta/workunit.php?wuid=186104285 ID: 56630 · Rating: 0 · rate: / Reply Quote