Please help. Does the indicated diagram ever change in the Native section of the screen?

I mean the indicator changes always on the "Searching All Atoms", "Accepted", and "Low Energy" indicators. But does it ever change on the "Native" indicator?

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Hi Omar,

no, it does not. The reason is quite simple: "Native" means the true, experimentally determined shape of the protein. In other words it is the blueprint that Rosetta is compared against when its accuracy is judged.

[Of course that is also within the limits of experimental error, which largely depends on the size of the protein and the method(s) used to determine its structure.]

Regards,

Christoph

[edited for spelling]