Nobel Prize to David Baker

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Profile [AF>Le_Pommier] Jerome_C2005

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Message 109872 - Posted: 14 Oct 2024, 19:16:07 UTC - in response to Message 109870.  

"Computing resources were provided by the volunteers who have donated the spare CPU cycles of their cellular telephones and computers to the Rosetta@Home project; the Hyak supercomputer at the University of Washington; and the Rhino cluster at the Fred Hutchinson Cancer Center"

*this* is concrete indeed, article is one year old (only). Thanks for the info.

I hope it is still true with the current application(s) and for the future.

Do you have any information about the beta version here ?

And about TrRosetta ?
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Profile [VENETO] boboviz

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Message 109873 - Posted: 14 Oct 2024, 19:52:39 UTC - in response to Message 109872.  
Last modified: 14 Oct 2024, 19:54:31 UTC

I hope it is still true with the current application(s) and for the future.
Do you have any information about the beta version here ?
And about TrRosetta ?


Rosetta protocols (that are the same of Rosetta@Home and Foldit) are used daily on Robetta Server
The problems about results/publications is that a lot of these are behind paywall (Nature, Science, etc)
For this paper (April 2024), for example, you have to pay. But Bakerlab, luckily, made it available for free:
We thank the University of Washington’s Hyak supercomputing team and
the volunteers of the Rosetta@home project for providing compute resources

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Falconet

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Message 109874 - Posted: 14 Oct 2024, 20:46:47 UTC - in response to Message 109864.  
Last modified: 14 Oct 2024, 21:46:09 UTC

Regarding TrRosetta, it appears to have been superseded by RoseTTAFold as seen on the Robetta page where it says 'May 27, 2022 - TrRosetta is no longer available as a modeling option. Please use the more accurate method, RoseTTAFold. '.

I don't believe there is any info about the Beta version 6.06. Over at Ralph, though, they were testing a new application called RoseTTAFold All-Atom. Last work for that application was in early September from what I can tell based on the forums. And there was also Rosetta version 4.29 in testing as recently as 4 August 2024.

Overall, development seems to be active, but communication is nearly non-existent.
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Profile [AF>Le_Pommier] Jerome_C2005

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Message 109879 - Posted: 16 Oct 2024, 8:37:57 UTC - in response to Message 109874.  

Thanks for all the info !
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Message 109919 - Posted: 26 Oct 2024, 15:28:30 UTC

Dr. Baker is interviewed by Quanta Magazine here, and the BOINC app graphics is displayed twice shortly after the 11 minute mark.
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Message 110189 - Posted: 12 Dec 2024, 16:14:25 UTC

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nekomi_ch

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Message 110199 - Posted: 13 Dec 2024, 11:24:21 UTC - in response to Message 109822.  

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Sid Celery

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Message 111853 - Posted: 3 Jan 2025, 21:27:21 UTC

I accidentally found David Baker contributing to a discussion hosted by Zeinab Badawi on the BBC from around 17minutes in if you have access to the BBC iPlayer.
First broadcast 14 Dec 2024

Nobel Minds
2024: 1. Physics and Chemistry
The winners of this year's Nobel Prizes in physics and chemistry discuss the potential and the risks of AI. Presented by Zeinab Badawi from the Royal Library in Stockholm


Edit: just found it more accessibly on youtube here
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Message boards : Rosetta@home Science : Nobel Prize to David Baker



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