Message boards : Number crunching : Rosetta Beta 6.00
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Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Win10 64bit machine ERROR: DPHE:N_Methylation:AcetylatedNtermConnectionProteinFull doesnt have connection at N ERROR:: Exit from: src/core/conformation/Conformation.cc line: 1756 BOINC:: Error reading and gzipping output datafile: default.out 19:53:06 (7448): called boinc_finish(1) |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,598,427 RAC: 8,864 |
Today still the same error. Please, stop this batch of 6.06 ERROR: Unable to find desired residue 'LEU' with variant 'SIDECHAIN_CONJUGATION'. Attempted to add target variant(s) to ResidueType using both ResidueType base name 'LEU' and base ResidueType. Was attempting to add new variant type 'SIDECHAIN_CONJUGATION' |
rilian Send message Joined: 16 Jun 07 Posts: 23 Credit: 2,831,026 RAC: 5,904 |
All my 113 rosetta beta 6.06 tasks errored but error messages are different command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_windows_x86_64.exe @hal_8a_p_hal_8aa_3jp6467_d57_1_0001_1.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1585198 Using database: database_f5ae1de8e1database ERROR: PHE:N_Methylation:AcetylatedNtermConnectionProteinFull doesnt have connection at N ERROR:: Exit from: src/core/conformation/Conformation.cc line: 1756 BOINC:: Error reading and gzipping output datafile: default.out command: projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_windows_x86_64.exe @hal_8a_q_hal_8aa_3jp2134_d135_0001.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2276248 Using database: database_f5ae1de8e1database ERROR: Unable to find desired residue 'DALA' with variant 'SIDECHAIN_CONJUGATION'. Attempted to add target variant(s) to ResidueType using both ResidueType base name 'DALA' and base ResidueType. Was attempting to add new variant type 'SIDECHAIN_CONJUGATION' ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 980 BOINC:: Error reading and gzipping output datafile: default.out 21:42:44 (16008): called boinc_finish(1) i crunch for Ukraine. Join our team forums about Rosetta@home |
rilian Send message Joined: 16 Jun 07 Posts: 23 Credit: 2,831,026 RAC: 5,904 |
Today still the same error. i am not sure it is always wise to "stop the batch" because there is a probability that this will prevent from finding all errors, so next batch will have them again unfixed i crunch for Ukraine. Join our team forums about Rosetta@home |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1679 Credit: 17,805,925 RAC: 22,594 |
It's all the same error.Today still the same error. No point in doing the same thing over & over again hoping for different outcome. Pull them all, sort out the problem. Then try again. Grant Darwin NT |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,598,427 RAC: 8,864 |
i am not sure it is always wise to "stop the batch" because there is a probability that this will prevent from finding all errors, so next batch will have them again unfixed No. - This is NOT a beta/test project. If you need to test, re-activate Ralph@home - After 2 days they have thousands of bugged wus, so they have not the problem to "find errors" - All errors are ALWAYS reported by volunteers |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2122 Credit: 41,194,697 RAC: 9,774 |
It's all the same error.Today still the same error. Sorry, I'm a bit confused by this. I reported that 1.6million tasks I spotted on the front page got pulled on Aug 16th, which is 4 days ago now. There may have been bits & pieces of Beta 6.06 issued since but mainly resends of tasks timed out. Only 1771 Beta 6.06 tasks are reported awaiting to come back, so I don't know why anyone's seeing anything at all. Just the odd few Rosetta 4.20 tasks which mainly run fine, with the occasional one crashing out several hours in. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1679 Credit: 17,805,925 RAC: 22,594 |
Only 1771 Beta 6.06 tasks are reported awaiting to come back, so I don't know why anyone's seeing anything at all.AFAIK they're not. I was responding to a post that was made in response to a post from when there were lots of Beta Tasks (18,000) still ready to be sent, but at that time had not been sent out (18/08, later that day, those Ready to send Tasks were all removed). Edit- of course it would be nice if they would fix Ralph, then we can get back to testing the new application there (instead of here) so that the next time they do release work here for it, it won't all die in seconds... Grant Darwin NT |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2122 Credit: 41,194,697 RAC: 9,774 |
Only 1771 Beta 6.06 tasks are reported awaiting to come back, so I don't know why anyone's seeing anything at all.AFAIK they're not. I didn't know about the 18k Beta tasks. I never saw that. But now guess what - validators are currently down... boinc-process again |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1679 Credit: 17,805,925 RAC: 22,594 |
But now guess what - validators are currently down... boinc-process againSo after 3 weeks of down time, the boinc-process server is still borked... Grant Darwin NT |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
But now guess what - validators are currently down... boinc-process againSo after 3 weeks of down time, the boinc-process server is still borked... What else is new here? Just bounce from one problem to another. BTW...assimilators are down as well. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1679 Credit: 17,805,925 RAC: 22,594 |
boinc-process is the server responsible for Validation, and Assimilation.So after 3 weeks of down time, the boinc-process server is still borked...What else is new here? Just bounce from one problem to another. Grant Darwin NT |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,598,427 RAC: 8,864 |
With this batch (RosettaVS_Save_all_out_nojran), graphic doesnt' work (on my Windows pcs) |
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Number crunching :
Rosetta Beta 6.00
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