BOINC@TACC would love to offer computational resources

Message boards : Rosetta@home Science : BOINC@TACC would love to offer computational resources

To post messages, you must log in.

AuthorMessage
BOINC@TACC

Send message
Joined: 24 Mar 20
Posts: 5
Credit: 0
RAC: 0
Message 92232 - Posted: 24 Mar 2020, 19:35:10 UTC
Last modified: 24 Mar 2020, 19:36:50 UTC

Dear Colleagues @ Rosetta@home: Should you need additional computing power through the resources volunteered for the BOINC@TACC project or the VMs on the cloud-computing platforms, please do not hesitate to contact us at rauta@tacc.utexas.edu

I was not sure how to contact the developer team for the Rosetta@home project and hence thought to post the message here and also sent in a tweet. If there is anyone I can email to for offering help, please let me know.

Thanks,
Ritu
ID: 92232 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
nealburns5

Send message
Joined: 11 May 19
Posts: 37
Credit: 10,184,436
RAC: 0
Message 92235 - Posted: 24 Mar 2020, 20:17:41 UTC - in response to Message 92232.  

I don't know who would be the best contact person, but there is contact info for David Baker here: https://www.bakerlab.org/index.php/contact/
ID: 92235 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
BOINC@TACC

Send message
Joined: 24 Mar 20
Posts: 5
Credit: 0
RAC: 0
Message 92236 - Posted: 24 Mar 2020, 20:27:07 UTC - in response to Message 92235.  

Thanks for the pointer - much appreciated!

Best Regards,
Ritu
ID: 92236 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Timo
Avatar

Send message
Joined: 9 Jan 12
Posts: 185
Credit: 45,649,459
RAC: 0
Message 92245 - Posted: 25 Mar 2020, 1:56:49 UTC

Hi, thanks for your offer of support. I'm not sure I understand why you need to ask if we need help? I'm pretty sure that the current spike in work (related to COVID-19) means this project will gladly take all the help they can get. To help, simply install and run the project on your compute resources. Thanks in advance from everyone in the community.
**38 cores crunching for R@H on behalf of cancercomputer.org - a non-profit supporting High Performance Computing in Cancer Research
ID: 92245 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
BOINC@TACC

Send message
Joined: 24 Mar 20
Posts: 5
Credit: 0
RAC: 0
Message 92248 - Posted: 25 Mar 2020, 2:30:19 UTC - in response to Message 92245.  
Last modified: 25 Mar 2020, 2:35:15 UTC

Hello,

The reason why I asked was because we can offer the plumbing to route tasks/work from Rosetta@home directly to BOINC@TACC and on other TACC systems such that we do not need to install clients on several thousand compute-nodes or cores that are in the cloud. If Rosetta@home can point us to the software (code or Docker images) of interest and datasets to process as a batch, we can provide multiple petaFLOPs of compute power.

We support running applications as Docker containers and we can help in scaling to several thousand cores.

Would this be of interest to you all?

Thanks,
Ritu
ID: 92248 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
BOINC@TACC

Send message
Joined: 24 Mar 20
Posts: 5
Credit: 0
RAC: 0
Message 92249 - Posted: 25 Mar 2020, 2:32:09 UTC - in response to Message 92248.  

We already support the following software packages in case they are useful for the Rosetta@home team: {Autodock-Vina, Bedtools, BLAST, Bowtie, GROMACS, HTSeq, LAMMPS, or NAMD }
ID: 92249 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mod.Sense
Volunteer moderator

Send message
Joined: 22 Aug 06
Posts: 4018
Credit: 0
RAC: 0
Message 92271 - Posted: 25 Mar 2020, 13:58:32 UTC

I have pointed David Kim to your post here. Thanks for offering your assistance.
Rosetta Moderator: Mod.Sense
ID: 92271 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
BOINC@TACC

Send message
Joined: 24 Mar 20
Posts: 5
Credit: 0
RAC: 0
Message 92275 - Posted: 25 Mar 2020, 15:46:55 UTC - in response to Message 92271.  

Thanks, we look forward to contributing to the Rosetta@home project.

Best Regards,
Ritu
ID: 92275 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1994
Credit: 9,623,704
RAC: 8,387
Message 92296 - Posted: 25 Mar 2020, 20:55:32 UTC

Great!! Collaborations are very important!
ID: 92296 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote

Message boards : Rosetta@home Science : BOINC@TACC would love to offer computational resources



©2024 University of Washington
https://www.bakerlab.org