Rosetta 4.1+ and 4.2+

Author	Message
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,619,623 RAC: 9,355	Message 98696 - Posted: 27 Aug 2020, 9:29:55 UTC Some "dna_binder_round2" erros <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_0xl9uz9j.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_0xl9uz9j.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_0xl9uz9j.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2351990 Using database: database_357d5d93529_n_methylminirosetta_database ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 11:12:09 (8600): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_0xl9uz9j_1008034_5_0_r1443010529_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> ID: 98696 · Rating: 0 · rate: / Reply Quote

Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0	Message 98699 - Posted: 27 Aug 2020, 12:21:23 UTC - in response to Message 98696. Same over here. dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_7sl2le1r_1008033_1_1 <core_client_version>7.16.7</core_client_version> <![CDATA[ <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_7sl2le1r.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_7sl2le1r.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_7sl2le1r.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2359514 Using database: database_357d5d93529_n_methylminirosetta_database ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 08:13:10 (7360): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_7sl2le1r_1008033_1_1_r568820554_0</file_name> <error_code>-240 (stat() failed)</error_code> </file_xfer_error> </message> ]]> ID: 98699 · Rating: 0 · rate: / Reply Quote

Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0	Message 98700 - Posted: 27 Aug 2020, 14:07:46 UTC - in response to Message 98699. Last modified: 27 Aug 2020, 14:09:17 UTC This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 [code]<core_client_version>7.16.7</core_client_version> <![CDATA[ <stderr_txt> aftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log F ID: 98700 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98701 - Posted: 27 Aug 2020, 19:07:03 UTC More from the dna_binder_round2 batch-= I've had 4 of those Tasks error out, and even the one that Validated produced an error. That's 3 different Errors so far for one batch of work. dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bi7wp4n_1008030_2_0 <core_client_version>7.6.33</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bi7wp4n.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bi7wp4n.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bi7wp4n.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2402633 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: no such file 1IG7_design_start_0993_0001.profile ERROR:: Exit from: ......srccorescoringconstraintsSequenceProfileConstraint.cc line: 175 BOINC:: Error reading and gzipping output datafile: default.out 20:20:03 (9080): called boinc_finish(1) </stderr_txt> ]]> dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bl6jj1c_1008030_5_0 <core_client_version>7.6.22</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bl6jj1c.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bl6jj1c.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_2bl6jj1c.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2396520 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: no such file 1IG7_design_start_0027_0001.profile ERROR:: Exit from: ......srccorescoringconstraintsSequenceProfileConstraint.cc line: 175 BOINC:: Error reading and gzipping output datafile: default.out 00:41:55 (552): called boinc_finish(1) </stderr_txt> ]]> dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_5uz9sz9d_1008034_4_0 <core_client_version>7.6.33</core_client_version> <![CDATA[ <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_5uz9sz9d.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_5uz9sz9d.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_5uz9sz9d.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2352341 Using database: database_357d5d93529_n_methylminirosetta_database ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 01:22:35 (1556): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_5uz9sz9d_1008034_4_0_r1701752269_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]> dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8ce5bg1n_1008034_4_0 <core_client_version>7.6.22</core_client_version> <![CDATA[ <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8ce5bg1n.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8ce5bg1n.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8ce5bg1n.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2341711 Using database: database_357d5d93529_n_methylminirosetta_database ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 00:35:49 (9764): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8ce5bg1n_1008034_4_0_r420120818_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]> And the one Valid, that still produced an error. dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8mi0ln1r_1008027_2_0 <core_client_version>7.6.22</core_client_version> <![CDATA[ <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting -parser:protocol single_helix_boinc_v1.xml @flags_TFSCAFFOLD -in:file:silent dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8mi0ln1r.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8mi0ln1r.zip @dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST_8mi0ln1r.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2442483 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: [ERROR] Unable to open constraints file: 1DU0_design_start_run_91_run_91.MSAcst ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 457 00:35:35 (3912): called boinc_finish(0) </stderr_txt> ]]> Grant Darwin NT ID: 98701 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98702 - Posted: 27 Aug 2020, 19:12:36 UTC - in response to Message 98700. This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 Just checked my Valids i got the same thing for all of those Work Units- Ran for the Target CPU time, Valid, but heaps of recurring errors in the Stderr output. Looks like not a single Decoy has been produced by any of those Work Units. Grant Darwin NT ID: 98702 · Rating: 0 · rate: / Reply Quote

Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,839,463 RAC: 13,224	Message 98703 - Posted: 27 Aug 2020, 19:18:44 UTC - in response to Message 98702. This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 Just checked my Valids i got the same thing for all of those Work Units- Ran for the Target CPU time, Valid, but heaps of recurring errors in the Stderr output. Looks like not a single Decoy has been produced by any of those Work Units. I haven't been given any sortilin_site2_graft_design_v1_9, but I have others with a different number than 9 and are all valid. ID: 98703 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98704 - Posted: 27 Aug 2020, 20:13:07 UTC - in response to Message 98703. I haven't been given any sortilin_site2_graft_design_v1_9, but I have others with a different number than 9 and are all valid. And all they have the same errors as the others. However Decoys are being produced by them all- you just have to scroll to the very end of the errors list to find them. Grant Darwin NT ID: 98704 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98705 - Posted: 27 Aug 2020, 20:16:41 UTC - in response to Message 98702. Last modified: 27 Aug 2020, 20:20:59 UTC This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 Just checked my Valids i got the same thing for all of those Work Units- Ran for the Target CPU time, Valid, but heaps of recurring errors in the Stderr output. Looks like not a single Decoy has been produced by any of those Work Units. Correction, Decoys are being produced-you just have to go to the end of Std_error file to find them. With Tomcat's Task, it ran for 24hours so i suspect the number of error messages produced was more than the file could hold so it was truncated. It looks like the difference between these Work Units and most others is that the others have one (or a only a few) Starting structures and produce all their Decoys from that one (few) structures. These ones with all the errors are producing hundreds of Starting Structures, and just one Decoy for each Starting structure. Grant Darwin NT ID: 98705 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,619,623 RAC: 9,355	Message 98706 - Posted: 27 Aug 2020, 21:28:47 UTC - in response to Message 98701. More from the dna_binder_round2 batch-= I've had 4 of those Tasks error out, and even the one that Validated produced an error. That's 3 different Errors so far for one batch of work. I'm crunching some dna_binder on Ralph without problems I hope this help to have a stable version of this simulation ID: 98706 · Rating: 0 · rate: / Reply Quote

MarkJ Send message Joined: 28 Mar 20 Posts: 72 Credit: 25,238,680 RAC: 0	Message 98710 - Posted: 28 Aug 2020, 12:28:00 UTC - in response to Message 98706. More from the dna_binder_round2 batch-= I've had 4 of those Tasks error out, and even the one that Validated produced an error. That's 3 different Errors so far for one batch of work. I've managed to kill 44 of them so far. Most work fine. The ones that fail do so straight away so we're not wasting CPU time on them but still a waste of network bandwidth. BOINC blog ID: 98710 · Rating: 0 · rate: / Reply Quote

Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,839,463 RAC: 13,224	Message 98712 - Posted: 28 Aug 2020, 18:24:26 UTC - in response to Message 98710. More from the dna_binder_round2 batch-= I've had 4 of those Tasks error out, and even the one that Validated produced an error. That's 3 different Errors so far for one batch of work. I've managed to kill 44 of them so far. Most work fine. The ones that fail do so straight away so we're not wasting CPU time on them but still a waste of network bandwidth. There's plenty of bandwidth, and the tasks are minute compared to 30MB Universe ULX or the enormous LHC Atlas tasks. They download a whole virtual machine. ID: 98712 · Rating: 0 · rate: / Reply Quote

Keith Myers Send message Joined: 29 Mar 20 Posts: 97 Credit: 332,619 RAC: 298	Message 98713 - Posted: 28 Aug 2020, 20:07:24 UTC - in response to Message 98702. This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 Just checked my Valids i got the same thing for all of those Work Units- Ran for the Target CPU time, Valid, but heaps of recurring errors in the Stderr output. Looks like not a single Decoy has been produced by any of those Work Units. I tried restarting one of those after it got stuck 3 times. Like you, nothing but errors in the stderr file. Gave up on it and aborted it. Of course it was replaced by a dna_binder task that immediately errored out. Running around 60% chance of any Rosetta task completely successfully on my host it seems. ID: 98713 · Rating: 0 · rate: / Reply Quote

Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0	Message 98714 - Posted: 28 Aug 2020, 20:52:05 UTC - in response to Message 98713. Last modified: 28 Aug 2020, 20:57:42 UTC This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 Just checked my Valids i got the same thing for all of those Work Units- Ran for the Target CPU time, Valid, but heaps of recurring errors in the Stderr output. Looks like not a single Decoy has been produced by any of those Work Units. I tried restarting one of those after it got stuck 3 times. Like you, nothing but errors in the stderr file. Gave up on it and aborted it. Of course it was replaced by a dna_binder task that immediately errored out. Running around 60% chance of any Rosetta task completely successfully on my host it seems. Just got another sortilin_site2_graft_design_v1 tasks, I'll run them to completion (which is 36 hours for me) and see if the same thing happens again. I also got a pair of dna_binder_round2_SAVE_ALL_OUT_IGNORE_THE_REST tasks that seem to be running fine. Lots of wonky tasks this week. ID: 98714 · Rating: 0 · rate: / Reply Quote

Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,839,463 RAC: 13,224	Message 98715 - Posted: 28 Aug 2020, 21:29:54 UTC - in response to Message 98713. This one in interesting. sortilin_site2_graft_design_v1_9_SAVE_ALL_OUT_IGNORE_THE_REST_9qb8kr2z_1007558_2_0 Just checked my Valids i got the same thing for all of those Work Units- Ran for the Target CPU time, Valid, but heaps of recurring errors in the Stderr output. Looks like not a single Decoy has been produced by any of those Work Units. I tried restarting one of those after it got stuck 3 times. Like you, nothing but errors in the stderr file. Gave up on it and aborted it. Of course it was replaced by a dna_binder task that immediately errored out. Running around 60% chance of any Rosetta task completely successfully on my host it seems. Interesting, since all of mine are ok on 6 machines. Perhaps we get different batches from the scheduler and you can be really unlucky? ID: 98715 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98716 - Posted: 28 Aug 2020, 23:07:15 UTC - in response to Message 98715. Last modified: 28 Aug 2020, 23:11:13 UTC Interesting, since all of mine are ok on 6 machines. Perhaps we get different batches from the scheduler and you can be really unlucky? And as i mentioned in my first response- While Valid all of your results have produced the same errors that we have been talking about for these Work Units. Exactly the same as for our Valid results from these particular Work Units. Grant Darwin NT ID: 98716 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98717 - Posted: 28 Aug 2020, 23:09:49 UTC - in response to Message 98713. Last modified: 28 Aug 2020, 23:15:27 UTC I tried restarting one of those after it got stuck 3 times. Like you, nothing but errors in the stderr file. Gave up on it and aborted it. Of course it was replaced by a dna_binder task that immediately errored out. Running around 60% chance of any Rosetta task completely successfully on my host it seems. Those WUs are producing Valid results, but for some reason they're also producing lots of errors in the as well. As i mentioned in a previous post- usually there are multiple decoys produced from a single Starting Structure. These Work Units for some reason produce multiple Starting Structures, and just 1 Decoy from each. Of course it was replaced by a dna_binder task that immediately errored out. Yeah, those things are almost nothing but computation errors, i think i've had about 3 or 4 that completed OK. Everything else bombs out in 30secs or less. Grant Darwin NT ID: 98717 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1680 Credit: 17,848,992 RAC: 22,990	Message 98718 - Posted: 28 Aug 2020, 23:16:48 UTC - in response to Message 98712. There's plenty of bandwidth Bandwidth is a finite resource, and it costs money to use. Better to spend that money on something useful, not noise. Grant Darwin NT ID: 98718 · Rating: 0 · rate: / Reply Quote

Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,839,463 RAC: 13,224	Message 98719 - Posted: 29 Aug 2020, 0:22:29 UTC - in response to Message 98718. Last modified: 29 Aug 2020, 0:22:41 UTC There's plenty of bandwidth Bandwidth is a finite resource, and it costs money to use. Better to spend that money on something useful, not noise. Well yes, but you have to be realistic. You don't (unless you're a nutcase pro cyclist) spend a grand on losing one gram from your bicycle. Although according to Jeremy Clarkson you can save about £100 a year in petrol by not having a moustache. ID: 98719 · Rating: 0 · rate: / Reply Quote

Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0	Message 98720 - Posted: 29 Aug 2020, 6:05:22 UTC - in response to Message 98714. Update, the sortilin tasks still have issues. sortilin_site1_graft_design_v1_12_SAVE_ALL_OUT_IGNORE_THE_REST_9na6ea4v_1007526_2_0 sortilin_site2_graft_design_v1_4_SAVE_ALL_OUT_IGNORE_THE_REST_9sn5rb8s_1007532_2_0 [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DE TAILS. And so on and so forth. ID: 98720 · Rating: 0 · rate: / Reply Quote

Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0	Message 98721 - Posted: 29 Aug 2020, 6:05:28 UTC - in response to Message 98714. Last modified: 29 Aug 2020, 6:07:21 UTC Update, the sortilin tasks still have issues. sortilin_site1_graft_design_v1_12_SAVE_ALL_OUT_IGNORE_THE_REST_9na6ea4v_1007526_2_0 sortilin_site2_graft_design_v1_4_SAVE_ALL_OUT_IGNORE_THE_REST_9sn5rb8s_1007532_2_0 [ ERROR ]: Caught exception: File: ......srcprotocolsmotif_graftingmoversMotifGraftMover.cc:537 For this scaffold there are not suitable scaffold grafts within your constrains ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. And so on and so forth. ID: 98721 · Rating: 0 · rate: / Reply Quote