Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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computezrmle Send message Joined: 9 Dec 11 Posts: 63 Credit: 9,680,103 RAC: 0 |
This may help - if it gets accepted someday: https://github.com/BOINC/boinc/issues/4602 https://github.com/BOINC/boinc/pull/4603 Over the weekend I was running a permanent load of 29 VMs concurrently on a 32 core box with 128 GB RAM. Disk I/O load - close to zero since /slots/ was mounted as tmpfs (similar to a ramdisk). But the project admins would have to create a new app version with reduced limits and the modified vboxwrapper. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
I hope differencing hard drive images support is coming soon. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
I have 49 gigs of memory and Python x 13 used up close to 65% of that memory and nothing else could run.Lightweight, I have 64GB in my main machine. 3 of my machines will take 128GB if necessary. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Oops , I forgot about that , I was thinking in Linux // VsWeird, tags have square brackets, why is it trying to interpret backslashes? Boinc forums are the most screwed up I've ever seen. 1 2 3 4 \ 5 \ 6 \ 7 \ 8 \\ 9 \\ 10 \\ Looks like every 4th one is shown. WTF?! |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 133 |
Maybe you can post an issue on boinc github? https://github.com/BOINC/boinc/issues |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Maybe you can post an issue on boinc github?I'll let them work on the important stuff. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
This may help - if it gets accepted someday:Sounds like a brilliant suggestion. I hope they make it work. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
I have 49 gigs of memory and Python x 13 used up close to 65% of that memory and nothing else could run.Lightweight, I have 64GB in my main machine. 3 of my machines will take 128GB if necessary. LOL you got money to burn or a good connection on parts. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
RAM costs less than a tank of petrol.I have 49 gigs of memory and Python x 13 used up close to 65% of that memory and nothing else could run.Lightweight, I have 64GB in my main machine. 3 of my machines will take 128GB if necessary. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
I have 49 gigs of memory and Python x 13 used up close to 65% of that memory and nothing else could run. snip ,snip.. does that meen you don't have "Leave non gpu tasks in memory while suspended" set , you will loose work past the last checkpoint but it uses more ram. see my thread https://boinc.bakerlab.org/rosetta/forum_thread.php?id=14903 All about the dreded "messing you about from server" The trick iz Give it loadza disk space , everything the disk has got. and my memory settings are "when in use 99%" when not in use 100%" The story continues . . . . |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1673 Credit: 17,614,203 RAC: 22,294 |
Good grief..do I need 4 massive sticks of memory now?No, you just need to read the messages that you are getting. Every single one of the messages you posted refers to disk space, not RAM. And it's not just Pythion- it is all of your projects complaining about a lack of disk space That is disk space, not RAM. All of your projects need more disk space, but there is 0 MB available. LHC@home: Notice from server CMS Simulation needs 7629.39MB more disk space. LHC@home: Notice from server ATLAS Simulation needs 9536.74MB more disk space. QuChemPedIA@home: Notice from server NWChem needs 4096.03MB more disk space. Rosetta@home: Notice from server rosetta python projects needs 19073.49MB more disk space. SiDock@home: Notice from server CurieMarieDock on BOINC + zipped input, checkpoints and progress bar needs 128.00MB more disk space. And the common denominator in all of those messages. You currently have 0.00 MB available All of your projects need more disk space. Grant Darwin NT |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
No, Boinc has a severe bug. I very much doubt he has precisely 0.00MB available. I think it's certain sizes of disk, it wraps around (as though they've used a small integer instead of a large one). I get around it by adjusting the amount of disk Boinc is allowed to use by a small amount. Last time I changed it from 95% to 100%. The disk was only half full, but crappy Boinc can't add up.Good grief..do I need 4 massive sticks of memory now?No, you just need to read the messages that you are getting. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
I put 100% everything, since it never uses what it says it will.I have 49 gigs of memory and Python x 13 used up close to 65% of that memory and nothing else could run. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
I put 100% everything, since it never uses what it says it will. Put a silly big number in the "use no more than" box , like 1000GB , untick the other two , boinc works it out and can use all possible. at least that's the theory I am working with at the moment. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
I think you can put 0 in a lot of boxes to mean infinity. But I seem to be using:I put 100% everything, since it never uses what it says it will.Put a silly big number in the "use no more than" box , like 1000GB , untick the other two , boinc works it out and can use all possible. Use at most 1000GB of disk space Leave at least 0.1GB of disk space Use at most 99% of total disk space Write to disk at most every 600 seconds (this is a pointless setting which is blatantly ignored) Use at most 100% of page file (I really don't understand this option. The page file is managed by windows, Boinc doesn't know about it. Boinc sees it all as RAM.) Use at most 100% memory while computer is in use Use at most 100% memory while computer is idle tick Leave application in memory while suspended. These options may differ slightly from what you see as I don't use the standard Boinc Manager. It's a horrid outdated simple black and white interface which doesn't even group a queue of 300 tasks into one line, it's totally unusable. I use Boinctasks. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
RAM costs less than a tank of petrol.I have 49 gigs of memory and Python x 13 used up close to 65% of that memory and nothing else could run.Lightweight, I have 64GB in my main machine. 3 of my machines will take 128GB if necessary. Not for me...32 gigs at my usual store from Corsair is 148 euro. Tank of fuel 98 unleaded 104 for at 1.71/L |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
113 Euros here for 1 x 32GB DDR4 3200MHz. Tank of 50 litres standard unleaded is 83 Euros. Similar. Ok, it's less than a seatbelt or speeding fine.RAM costs less than a tank of petrol.Not for me...32 gigs at my usual store from Corsair is 148 euro. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Greg, technical questions are being asked, you can respond here, or tell me what to say if you don't want to create an account. https://github.com/BOINC/boinc/issues/4629#issuecomment-1032102228 |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
Write to disk at most every 600 seconds (this is a pointless setting which is blatantly ignored) If those kind of settings don't work , nothing will Boinc does do many small writes to the disk all the time , I am sad enough to have sat and watched `Resource Monitor` trying work what it was doing. The wording in the boinc manager settings is for a full check point "Request tasks to checkpoint at most every 60 seconds" Having had a read this thread Rosetta Python floods disks with snapshots I changed my checkpoint interval to 3600 seconds to reduce the number of checkpoints it does to save on disk wrights , a few seconds of time and for the sake of generaly messing about with the system. and reading the output files of valid work units it now only does one full checkpoint per hour instead of six. The default for python in the output file is 600 the BM setting does change it I only restart them when I have to , not a setting recommended for regular shutdown and restarted Pc`s |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 11,974 |
Well mine says 10 minutes, but the writing is continuous. I just ran some rare covid GPU units from WCG. The disk was doing 20MB/sec write non-stop. Another Boinc screwup.Write to disk at most every 600 seconds (this is a pointless setting which is blatantly ignored) |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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